PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00002751-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family NF-YB
Protein Properties Length: 174aa    MW: 18791.1 Da    PI: 8.0435
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00002751-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB178.75.3e-5610105297
                  NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkk 89 
                            reqdrflPianvsrimk+ lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllw ++tlGfe+yv+plk+yl+k
  SMil_00002751-RA_Salv  10 REQDRFLPIANVSRIMKRGLPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWGMTTLGFENYVDPLKLYLQK 97 
                            89************************************************************************************** PP

                  NF-YB  90 yrelegek 97 
                            +r++e+ek
  SMil_00002751-RA_Salv  98 FRDVEEEK 105
                            *****997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.4E-5110117IPR009072Histone-fold
SuperFamilySSF471132.48E-3912121IPR009072Histone-fold
PfamPF008083.8E-261577IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.2E-204361No hitNo description
PROSITE patternPS0068504662IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.2E-206280No hitNo description
PRINTSPR006151.2E-208199No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MSRGIIGTPR EQDRFLPIAN VSRIMKRGLP ANAKISKDAK ETVQECVSEF ISFITGEASD  60
KCQREKRKTI NGDDLLWGMT TLGFENYVDP LKLYLQKFRD VEEEKTVMAG RRDKDSGGDG  120
DGDADAGFYG LNVMGHQGGP VYGSYHVGAT SGAAAARRGG GAGRSSRLGS FTCD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-4710100292Transcription factor HapC (Eurofung)
4g92_B3e-4710100292Transcription factor HapC (Eurofung)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007142418.12e-68hypothetical protein PHAVU_008G278900g
RefseqXP_011095535.13e-68PREDICTED: nuclear transcription factor Y subunit B-3-like
SwissprotO233107e-65NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLV7B9593e-68V7B959_PHAVU; Uncharacterized protein
STRINGVIT_19s0015g00440.t011e-66(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.17e-63nuclear factor Y, subunit B3